I downloaded what I hope to be a human transcriptome data file from biomart. I select for gene types in Gene, cDNA Sequences in Attributes and in header info, I pick Gene Stable ID and Transcript ID. The downloaded file is in txt format.
When I initiate salmon to index the file salmon index -t ~/path/mart_export.txt -i hg38_index
I get the following :
error Building suffix array . . . FAILURE: return code from libdivsufsort() was -1
Could anyone please help me with this?