Question: How to program Galaxy pipeline to execute it on the new SRA identifier or on the uploaded FASTQ pair every new run?
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gravatar for msprindzhuk
6 months ago by
msprindzhuk40
msprindzhuk40 wrote:

How to program Galaxy pipeline to execute it on the new SRA identifier or on the uploaded FASTQ pair every new run? We have a multistep pipeline from sra identifier to genome annotation, including many steps of data processing and normalization. The unsolved problem is how to make the first step of the pipeline, which is to take a new genome for processing, to be dynamically updated to enable the processing of a stack of genomes?

fastq sra pipeline stack • 185 views
ADD COMMENTlink modified 6 months ago • written 6 months ago by msprindzhuk40
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