Question: Htseq-count error: [Errno 2] No such file or directory: 'name_sorted_alignment.bam'
gravatar for arianna.moiani
8 months ago by
arianna.moiani0 wrote:

Dear all, I am facing this error while running HTseq-count on a BAM file obtained with Tophat:

Fatal error: Unknown error occured open: No such file or directory [bam_sort_core] fail to open file name_sorted_alignment.bam [Errno 2] No such file or directory: 'name_sorted_alignment.bam' [Exception type: IOError, raised in]

there is no error in the BAM file I am using nor in the command, as the exact same command was performed on the same files a while ago, so this is an error that I am experiencing just now while trying to re-perform the same analysis on the same files. Is it due to problems to the Galaxy server? How can I do to overcome this error?

Thank you, best regards, Arianna

ADD COMMENTlink written 8 months ago by arianna.moiani0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 102 users visited in the last hour