Hello there,
I'm trying to implement the SAM-TO-BAM version 1.1.4 tool in Galaxy local instance. I got the following error.
Traceback (most recent call last): File "/Users/Salmo08/galaxy/lib/galaxy/jobs/runners/local.py", line 128, in queue_job job_wrapper.finish( stdout, stderr, exit_code ) File "/Users/Salmo08/galaxy/lib/galaxy/jobs/__init__.py", line 1265, in finish dataset.datatype.set_meta( dataset, overwrite=False ) File "/Users/Salmo08/galaxy/lib/galaxy/datatypes/binary.py", line 347, in set_meta exit_code = subprocess.call( args=command, stderr=open( stderr_name, 'wb' ) ) File "/Users/Salmo08/miniconda2/lib/python2.7/subprocess.py", line 523, in call return Popen(popenargs, *kwargs).wait() File "/Users/Salmo08/miniconda2/lib/python2.7/subprocess.py", line 711, in __init__ errread, errwrite) File "/Users/Salmo08/miniconda2/lib/python2.7/subprocess.py", line 1343, in _execute_child raise child_exception OSError: [Errno 2] No such file or directory
Tool execution generated the following error message: Unable to finish job
I tried other versions as well. I'm getting the same error. Does anyone know what the issue is?. Thanks in advance.