Question: Error- SAM to BAM tool in Galaxy local instance
gravatar for braveen.joseph
24 months ago by
braveen.joseph20 wrote:

Hello there,

I'm trying to implement the SAM-TO-BAM version 1.1.4 tool in Galaxy local instance. I got the following error.

Traceback (most recent call last): File "/Users/Salmo08/galaxy/lib/galaxy/jobs/runners/", line 128, in queue_job job_wrapper.finish( stdout, stderr, exit_code ) File "/Users/Salmo08/galaxy/lib/galaxy/jobs/", line 1265, in finish dataset.datatype.set_meta( dataset, overwrite=False ) File "/Users/Salmo08/galaxy/lib/galaxy/datatypes/", line 347, in set_meta exit_code = args=command, stderr=open( stderr_name, 'wb' ) ) File "/Users/Salmo08/miniconda2/lib/python2.7/", line 523, in call return Popen(popenargs, *kwargs).wait() File "/Users/Salmo08/miniconda2/lib/python2.7/", line 711, in __init__ errread, errwrite) File "/Users/Salmo08/miniconda2/lib/python2.7/", line 1343, in _execute_child raise child_exception OSError: [Errno 2] No such file or directory

Tool execution generated the following error message: Unable to finish job

I tried other versions as well. I'm getting the same error. Does anyone know what the issue is?. Thanks in advance.

galaxy sam-to-bam • 572 views
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