Question: Sequence logo from a text file?
gravatar for o3964fn4n
13 months ago by
o3964fn4n0 wrote:


I have a text file with results from a screen. I know that "The identifiers in the file are from the hg38 GENCODE V24 basic annotation (table:wgEncodeGencodeBasicV24)"

I then have to make a sequence logo based on the first 15 positions in the transcripts that were found to be significant hits in the screen.

I know that I have to use Galaxy to make a sequence logo, but how do I get my information into galaxy? Do I use my original text file or do I get data from galaxy? Because my file is a txt.file and when making a sequence logo you have to use a fasta file

Thanks in advance.

pssm ucsc sequence logo galaxy • 303 views
ADD COMMENTlink written 13 months ago by o3964fn4n0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 130 users visited in the last hour