Question: Sam To Bam tool hangs in Cloning stage, though other tools, including Pilon, could be installed
0
gravatar for msprindzhuk
9 months ago by
msprindzhuk40
msprindzhuk40 wrote:

Sam To Bam tool hangs in Cloning stage, though other tools, including Pilon, could be installed. How to fix that? Does anybody have experience with Sam 2 bamm tool installation problems? Is there any other tool or module for SAM to BAM conversion?

sam2bam samtools • 276 views
ADD COMMENTlink modified 9 months ago by Jennifer Hillman Jackson23k • written 9 months ago by msprindzhuk40
0
gravatar for Jennifer Hillman Jackson
9 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

This tool suite installs without problems on a default 17.01 instance. Try uninstalling then reinstalling the tool.

If dependency/installation problems continue, please review the help here to ensure that managed dependencies are used: https://docs.galaxyproject.org/en/master/admin/dependency_resolvers.html

Thanks! Jen, Galaxy team

ADD COMMENTlink written 9 months ago by Jennifer Hillman Jackson23k

Root problem likely related to your prior question: Conda problem during tool installation https://biostar.usegalaxy.org/p/22159/

We should follow up in one thread only, get Conda installed and used correctly, then troubleshoot more from there as needed.

ADD REPLYlink written 9 months ago by Jennifer Hillman Jackson23k
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