Sam To Bam tool hangs in Cloning stage, though other tools, including Pilon, could be installed. How to fix that? Does anybody have experience with Sam 2 bamm tool installation problems? Is there any other tool or module for SAM to BAM conversion?
This tool suite installs without problems on a default 17.01 instance. Try uninstalling then reinstalling the tool.
If dependency/installation problems continue, please review the help here to ensure that managed dependencies are used: https://docs.galaxyproject.org/en/master/admin/dependency_resolvers.html
Thanks! Jen, Galaxy team