Similar posts • Search »

• Bowtie2/BWA-MEM remain waiting to run for several days in Main server. Is it only in my account?
  Hi all, I've been trying to run Bowtie2 and BWA-MEM with several datasets and in different histo...
• Assembly waiting to run
  I am trying to do a hybrid assembly using unicycler in Galaxy, but my job has had the status "wai...
• This job is waiting to run
  Hi, The job is waiting to run for 2 days. What should I do? I'm using STAR and I wonder if my jo...
• BWA-MEM mapping Taking longer time
  Hi Folks, I am trying to run BWA-MEM mapping, its taking longer time. Can you please look into i...
• Unicycler jobs - "This job is waiting to run" for 2 days
  Is there something wrong with the computing clusters? I submitted this job almost 48 hours ago an...
• Need help with "Map with BWA for Illumina" tool
  Thanks a lot for your answer. I  used FASTQ groomer to convert fastq format to fastqsanger. I sta...
• Re: Ngs Mapping Using Lastz
  Hi, I'm trying to map a data set containing 454 reads to a reference genome using LASTZ alignmen...
• Every job is waiting to run
  I wanted to upload mu trimmed reads to galaxy and map them using bowtie, but the only task I was ...
• Bowtie2/FreeBayes/mpileup variant detection on NGS of PCR amplicons around Cas9/CRISPR indels
  Hey threre, I have an MiSeq experiment using 24 indices where in each index I was sequencing 3 P...
• Galaxy "This job is waiting to run" - but it never runs!!
  I've had a problem with galaxy all day, when I try to use the BWA-MEM tool I get the message "Thi...
• BWA for Illumina
  Hello, I'm starting to use Galaxy, and I'm trying to generate vcf and BAM files from my Fastq (pa...
• Separating (F and R) reads uploaded from NCBI SRA & mapping them using BWA-MEM
  Can someone explain to me the best way to prepare NCBI SRA data for subsequent mapping to a cust...
• Query Not Starting
  Hello, I am having problem with starting my query. For days it is showing "Job waiting to run". ...
• Job is waiting to run.
  Hello,  I have been trying to run a Bowtie job(s) for two full days and they just hang with the ...
• Merge 3 mapped bam datasets on Galaxy main takes more than 30h - normal?
  Hi, Trying to *merge* 3 mapped BAM datasets, 1.8 KB each, using the **Convert, Merge, Randomize*...
• Bowtie Mapping Waiting To Run For 3 Days
  Hi, I was wondering if I have to re-run them or if I just need to wait. Thanks, Yanina
• ANNOVAR galaxy returning an empty file
  I am working through a project that requires me to Identify genes with polymorphic sites using AN...
• Job Is Waiting To Run For Two Days..
  Hi, I am in the step "map with bowtie" with a status of JOB IS WAITING TO RUN for two days. I tri...
• Mapping Does Not Start
  Hi, I am trying to map sequences with Bowtie. Have been waiting for a few hours now but it still...
• BWA error [bwa_aln] 17bp reads: max_diff = 2
  I wish to align single end fastq sample using "Map with BWA" tool. The reads were trimmed several...
• Data not loading; now, jobs not running--is it my account?
  Hey all, A Galaxy newbie here. I created an account last week in order to complete a lab for a co...
• Using BWA with Illumina data and metagenomic "reference genome"
  Hi, I'd like to try using BWA to align Illumina reads to some contigs a collaborator made from my...
• Usegalaxy.org: Jobs ending with error "Unable to finish job" having details "TypeError: object of type 'NoneType' has no len()" -- RESOLVED, please rerun
  Hello, I have problems with Map with BWA-MEM tool, I launch my Galaxy workflow but, two days ago...