Question: Tophat taking for a long time
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tegawa • 0 wrote:
I am running Cufflinks of a couple of dozens of RNAseq Bam files from using mm9 as a reference. First 10 or so went well, but now Cufflinks of two Bam files are running (yellow colored) for >16 hours and it does not seem to be completed. I understand that the processing time depends on the load on the server CPU, but could there been something wrong that causes the delay? These Bam files are either from TopHat in the same history, or uploaded Bam from previous analyses. The particular two files are directly from the TopHat. Thank you so much for your advice.
