Question: TopHat with Culex quinquefasciatus genome
gravatar for cheolho_sim
10 weeks ago by
cheolho_sim0 wrote:

I try to use TopHat for RNA-seq data. The Culex quinquefasciatus genome will be used for the TopHat. Would you me a guide which genome data that I need to use along with RNA-seq data (from Illumina HighSeq)?

Here is the Culex quinquefasciatus genome data webpage.

Assembly, Gene set, Scaffolds?

rna-seq • 89 views
ADD COMMENTlink modified 10 weeks ago by Jennifer Hillman Jackson22k • written 10 weeks ago by cheolho_sim0
gravatar for Jennifer Hillman Jackson
10 weeks ago by
United States
Jennifer Hillman Jackson22k wrote:


Use the Scaffolds data as the target reference genome.

Load the fasta file into Galaxy and use it as a Custom reference genome with Tophat and other tools.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 10 weeks ago by Jennifer Hillman Jackson22k
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