Question: Mapping To Only 3 Genes / Targeted Resequencing / Solid4 / Short Reads
0
Jochen Seggewiß • 30 wrote:
Hi!
Following situation:
10 barcoded "samples". Each sample consists of a mix of the sequences
3
independent genes (á 2 alleles).
I would like to map the SOLiD4 reads only to the sequences of those 3
genes, patient by patient.
First, the 10 barcoded samples have to be separated from each other.
Then, the short reads have to be mapped to the sequences of the 3
genes,
which are available in FASTA-format (single) or multi-FASTA-format
(all
sequences in one file).
Is this possible using the available GALAXY tools?
How?
Thank you in advance.
Jose
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modified 7.6 years ago
by
Jennifer Hillman Jackson ♦ 25k
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written
7.7 years ago by
Jochen Seggewiß • 30
