Question: Data Managers not containing uploaded data? (hg38 missing)
0
gravatar for Inquirer
12 months ago by
Inquirer70
Inquirer70 wrote:

Hi everyone,

I am trying to load some reference genomes onto our Galaxy production server. Following the advice provided on this forum (for instance, https://biostar.usegalaxy.org/p/19371/), I tried to use data managers to that purpose, but they only display reference genomes release until 2010. I have tried with the base "Reference genome" tool (v0.01), with "Create DBKey and Reference Genome" (v0.02) and, finally, "Rsync with g2" (v0.01). All of them listed the same genomes, which in humans fail to include hg38. The most recent human genome was Human Feb. 2009 (GRCh37/hg19) (hg19).

Is it normal? According to this post, the hg38 reference genome should be on the list of existing builds, but I definitely cannot see it. Am I doing something wrong? The tools are updated, and so is my Galaxy instance, which I updated via git pull. Thanks in advance.

ADD COMMENTlink modified 12 months ago by Jennifer Hillman Jackson23k • written 12 months ago by Inquirer70
1
gravatar for Jennifer Hillman Jackson
12 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

The tool "Create DBKey and Reference Genome" will create the genome description (shown in the UI) and dbkey. Use this when adding a few genome not in the existing list.

I corrected the other post.

Sorry for the confusion, Jen, Galaxy team

ADD COMMENTlink written 12 months ago by Jennifer Hillman Jackson23k

Now I get it! Thanks a lot!

ADD REPLYlink written 12 months ago by Inquirer70
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