Question: error running DESeq2
gravatar for linda.boshans
21 months ago by
United States
linda.boshans10 wrote:


I am running DeSeq2 on tophat Htseq converted files. The job is marked red with an error, but I did get an analysis of differentially expressed genes. I am wondering if this error can be ignored and whether I can trust the outputted results. The error is coming from "Error in text(x = c(0, length(h1$counts)), y = 0, label = paste(c(0, 1)), : object 'h1' not found".

error tool known-issue deseq2 • 649 views
ADD COMMENTlink modified 21 months ago by Jennifer Hillman Jackson25k • written 21 months ago by linda.boshans10
gravatar for Jennifer Hillman Jackson
21 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hi Linda,

This tool has known issues at An updated version of the tool is pending an updated installation. Please follow this ticket to learn when it is ready for use again:

As for any partial outputs - my guess is that they are probably OK, or mostly OK, but that isn't certain. I suggest waiting for the update.

Sorry for the inconvenience and thanks for reporting the problem,


ADD COMMENTlink written 21 months ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 104 users visited in the last hour