Are there any Galaxy community standards for identifying command line arguments by name?
We are adapting a suite of tools to work in Galaxy and we're writing the "glue" code that will pass parameters from the Galaxy GUI to our tools. All of the examples I've seen so far show positional parameters passed on the command line. We would like to use named parameters something like this:
tool a=5 b=8 tool -a 5 -b 8
We can write our code to meet any standard, and I was wondering if there are any conventions that we might want to follow. Any thoughts?
Thanks in advance.