Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Problem when using the tool- Fetch Alignment/Sequences-Stitch Gene Blocks
0
gravatar for q.shen
2.3 years ago by
q.shen • 0
q.shen • 0 wrote:

Hi~ I got a problem when I fetching alignments recently (Fetch Alignment/Sequences-Stitch Gene Blocks).

When I change the MAF type from 100-way to 46-way, the items below(the species track) will not change. Thus I cannot use 46-way alignment as before. Since lots of my previous data were properly aligned by using 46-way, for consistency, I would like to still use this MAF type. Could anyone please help me to figure it out?

Thanks so much!
alignment • 784 views
ADD COMMENT • link •
modified 2.3 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.3 years ago by q.shen • 0
1
gravatar for Jennifer Hillman Jackson
2.3 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Thanks for reporting the issue. I can reproduce this at http://usegalaxy.org (Galaxy Main). It is not clear yet if the issue is present only at Main (configuration problem) or if it is a tool bug, but this will be a part of the next testing steps. A ticket has been opened that can be followed for the resolution: https://github.com/galaxyproject/galaxy/issues/2828

Our apologies for the confusion, Jen, Galaxy team
ADD COMMENT • link written 2.3 years ago by Jennifer Hillman Jackson ♦ 25k

Hi Jen,

Many thanks for the response. But I am still wondering whether this problem will be fixed in a few days or maybe sometime later this year? Thus I could reschedule my project in time. Thanks!

Best wishes, Sunny

ADD REPLY • link written 2.3 years ago by sunnyshen312 • 0

I cannot give a firm time estimate about a fix, but I can say that it is unlikely to be completed and ready at http://usegalaxy.org in a few days. The timeline is more like a few weeks to a few months.

ADD REPLY • link written 2.3 years ago by Jennifer Hillman Jackson ♦ 25k

Many thanks!

Best wishes, Sunny

ADD REPLY • link written 2.3 years ago by sunnyshen312 • 0
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 176 users visited in the last hour