After several days of struggling, I finally managed to set up a Galaxy instance in Cloudman...only to discover that I cannot run Tophat because there are no built-in genomes. I want to use the Human Feb. 2009 hg19 reference data: Human (Homo sapiens) (b37): hg19
I set up a Cloudman instance in order to save time and enable faster processing. Unfortunately I have lost a lot of precious time ahead of a research publication deadline.
I am not a developer or programmer. Can someone please provide simple step-by-step instructions on how get a reference genome installed so that i can run Tophat on my fastq files?
Thank you, ---Karmella