I want to run multiple threads in Tophat and Cuffdiff on Galaxy (“-p” option). But in the tool forms of Tophat and Cuffdiff, I could not find a place where we can specify the number of threads.
In this case, how many threads does Galaxy run on these tools? Just one thread (since the default is 1)?
We have very large data. If running just one thread it would be really slow.
I’d appreciate any advice on this.
Thank you very much in advance!