Hi, If any kind soul could help,
I loaded BAM files in IGV and i notice some interesting splicing junction read depth across my samples. I am currently manual click the location in order to view the depth. Is there a method to do that automatically to look at all junction coverage? I am working on targeted sequencing of exon junctions. I am particularly interested to extract the info e.g. 3045666 - 3045888 (genomic coordinate), depth = 456 which it will show when I click the splicing coverage region in IGV.