Question: GO specific terms
gravatar for ajmaninisha
2.5 years ago by
ajmaninisha30 wrote:

Hi All,

I have ensemble ids and i want to find the specific terms associated with it, I used biomart and it gave me the results related to biological process, cellular component and molecular function. But i want to specifically look for the term reproduction . Is there a way out to categorize the GO terms and search for specific terms.

i am doing my research on a non-model organism "lamprey". So most of the software programs doesnt have lamprey in their organism list .

Kindly advise


gene id biomart go • 529 views
ADD COMMENTlink modified 2.5 years ago by Jennifer Hillman Jackson25k • written 2.5 years ago by ajmaninisha30
gravatar for Jennifer Hillman Jackson
2.5 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Yes, all three of these categories will be in the global list. You could filter the terms from Biomart with the tool Select first, then perform a Column Join on the common identifiers (Ensembl IDs) with that result. Just be aware that there is nesting within GO categories and you might miss some relevant content this way.

I was going to suggest these sites as an alternative since the searches are more flexible, but I also did not find much or any annotation for your target species. Somewhat odd that Biomart contains the content and others do not.

I hope the filter tools will be enough help! Jen, Galaxy team

ADD COMMENTlink written 2.5 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 180 users visited in the last hour