Question: TopHat alignment failure
0
gravatar for jmarrocco
2.1 years ago by
jmarrocco0
jmarrocco0 wrote:

It has been two days I can't align my data. TopHat gives an error message few seconds after the execution (using the built in genome mm10).

tophat • 499 views
ADD COMMENTlink written 2.1 years ago by jmarrocco0

Hello, We are running a few tests and will get back to you shortly. Thanks, Jen, Galaxy team

ADD REPLYlink written 2.1 years ago by Jennifer Hillman Jackson25k
0
gravatar for Jennifer Hillman Jackson
2.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

I am able to run Tophat with both single and paired-end inputs without a problem on a few clusters (not all test jobs finished yet).

Update: There were issues with jobs running on the cluster Stampede yesterday. Perhaps avoid that cluster and use Jetstream instead.

If you need more help, please describe the error message and/or submit a bug report. https://wiki.galaxyproject.org/Support#Reporting_tool_errors

Thanks, Jen, Galaxy team

ADD COMMENTlink modified 2.1 years ago • written 2.1 years ago by Jennifer Hillman Jackson25k
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