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Question: sra dataset in galaxy
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gravatar for 1603.neha
2.6 years ago by
1603.neha • 70
1603.neha • 70 wrote:

how to make sra dataset in galaxy for analysis.please help me i am highly confused how to use it.as the get data-ebi sra link gets you out of the galaxy . dont know how to use it
rna-seq assembly • 786 views
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modified 2.6 years ago by Hotz, Hans-Rudolf • 1.8k • written 2.6 years ago by 1603.neha • 70
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gravatar for Hotz, Hans-Rudolf
2.6 years ago by
Hotz, Hans-Rudolf • 1.8k
Switzerland
Hotz, Hans-Rudolf • 1.8k wrote:

Hi

It only looks like you are out of Galaxy. Any selected fastq files will become a Galaxy History item. For example:

search for "ERA007448"

click on "ERA007448" (below "Submission (Read/Analysis) (1 results found)")

you get a big table, where one column is called: "Fastq files (galaxy)".

click on one files in this column, and you will get the Galaxy interface again, and the selected file will become your next History item (be patient, depending on the size of the selected file, it will take a while)

Hope this helps, Hans-Rudolf
ADD COMMENT • link written 2.6 years ago by Hotz, Hans-Rudolf • 1.8k
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