Hi everyone, first time poster here, sorry if this is the wrong place for this. I just recently installed the latest stable checkout of Galaxy and am working on getting my tools up and running, ran into a bit of a roadblock. I installed the GATK v.3 wrapper from avowinkel (revision b80ff7f43ad1). Jobs fail with the following output:
Traceback (most recent call last):
File "/home/galaxy/galaxy/lib/galaxy/jobs/runners/__init__.py", line 166, in prepare_job
File "/home/galaxy/galaxy/lib/galaxy/jobs/__init__.py", line 889, in prepare
self.command_line, self.extra_filenames, self.environment_variables = tool_evaluator.build()
File "/home/galaxy/galaxy/lib/galaxy/tools/evaluation.py", line 442, in build
TypeError: unsupported operand type(s) for +: 'SelectToolParameterWrapper' and 'str'
I've tried digging through the wrappers to figure out where things are going off the rails, but I just don't have the coding ability to track this thing down. I tried starting with the .xml wrappers themselves, and also tried backtracking from the __init__.py file referenced in the error. Has anyone else run into this particular issue?