Question: How to update the Python version in Galaxy
gravatar for asif.karim.csedu
24 months ago by
asif.karim.csedu10 wrote:


I am a very new user of Galaxy. I have been trying to develop some tools to be integrated into the Galaxy server with Python 3.5. However, I got to know that the galaxy server itself was written with Python 2.6/2.7.

Therefore, I am getting several errors since the Galaxy is not compatible with my source code.

Can someone let me know how to update the python version in the Galaxy server?


update version galaxy python • 818 views
ADD COMMENTlink modified 23 months ago by Martin Čech ♦♦ 4.4k • written 24 months ago by asif.karim.csedu10
gravatar for Martin Čech
23 months ago by
Martin Čech ♦♦ 4.4k
United States
Martin Čech ♦♦ 4.4k wrote:

Galaxy will not run on Python3 so you need to make your tool dependent on a specific Python package from the Tool Shed. I would recommend using one of these:

With that, when your tool is installed, Galaxy will also install the requested Python and will run your tool with that python in PATH. Please see the following tool that depends specifically on Python 2.7:

ADD COMMENTlink written 23 months ago by Martin Čech ♦♦ 4.4k
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