Question: Bam datasets to filter
gravatar for abdelazeem_abdelhameed2015505
2.7 years ago by

I need to filter bam dataset on 2 conditions `condition1 Mapquality More than 20 Filter2 Isproper pair Properly paired reads true

filter bam • 497 views
ADD COMMENTlink modified 2.7 years ago by Jennifer Hillman Jackson25k • written 2.7 years ago by abdelazeem_abdelhameed20155050
gravatar for Jennifer Hillman Jackson
2.7 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Try the tool NGS: SAMtools > Filter SAM or BAM, output SAM or BAM files on FLAG MAPQ RG LN or by region.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.7 years ago by Jennifer Hillman Jackson25k
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