Bam datasets to filter

Heads up! This is a static archive of our support site. Please go to help.galaxyproject.org if you want to reach the Galaxy community. If you want to search this archive visit the Galaxy Hub search

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Forum

Planet

All »

Home

Welcome to Galaxy Biostar! User support for Galaxy! about • faq • rss

Community

Log In

Sign Up

Add New Post

Question: Bam datasets to filter

2.7 years ago by

abdelazeem_abdelhameed2015505 • 0

abdelazeem_abdelhameed2015505 • 0 wrote:

I need to filter bam dataset on 2 conditions `condition1 Mapquality More than 20 Filter2 Isproper pair Properly paired reads true

filter bam • 497 views

ADD COMMENT • link •

modified 2.7 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.7 years ago by abdelazeem_abdelhameed2015505 • 0

2.7 years ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Try the tool NGS: SAMtools > Filter SAM or BAM, output SAM or BAM files on FLAG MAPQ RG LN or by region.

Thanks, Jen, Galaxy team

ADD COMMENT • link written 2.7 years ago by Jennifer Hillman Jackson ♦ 25k

Please log in to add an answer.

Similar posts • Search »