Question: Upload proble from another pc
0
gravatar for jarod_v6
23 months ago by
jarod_v60
Italy
jarod_v60 wrote:

HI!!

I need to import some data in galaxy for try some pipelines. I have installed a local version on Centos 6.7 of galaxy as root on opt directory, When I try to upload a simple csv file I have and error like this:

Failed: Not Found (404) / opt/galaxy/eggs/SQLAlchemy-1.0.8-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/sql/sqltypes.py:565: SAWarning: Dialect sqlite+pysqlite does not support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage. /opt/galaxy/eggs/SQLAlchemy-1.0.8-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/sql/default_comparator.py:153: SAWarning: The IN-predicate on "request_type.id" was invoked with an empty sequence. This results in a contradiction, which nonetheless can be expensive to evaluate. Consider alternative strategies for improved performance. 172.17.179.93 - - [29/Mar/2016:11:54:44 +0200] "GET / HTTP/1.1" 200 - "-" "Mozilla/5.0 (X11; Linux x86_64; rv:38.0) Gecko/20100101 Firefox/38.0" 172.17.179.93 - - [29/Mar/2016:11:54:44 +0200] "GET /api/datatypes?extension_only=False& HTTP/1.1" 200 - "http://172.17.179.93:8082/" "Mozilla/5.0 (X11; Linux x86_64; rv:38.0) Gecko/20100101 Firefox/38.0" 172.17.179.93 - - [29/Mar/2016:11:54:44 +0200] "GET /root/welcome HTTP/1.1" 302 - "http://172.17.179.93:8082/" "Mozilla/5.0 (X11; Linux x86_64; rv:38.0) Gecko/20100101 Firefox/38.0" 172.17.179.93 - - [29/Mar/2016:11:54:44 +0200] "GET /api/genomes HTTP/1.1" 200 - "http://172.17.179.93:8082/" "Mozilla/5.0 (X11; Linux x86_64; rv:38.0) Gecko/20100101 Firefox/38.0" 172.17.179.93 - - [29/Mar/2016:11:54:44 +0200] "GET /history/current_history_json HTTP/1.1" 200 - "http://172.17.179.93:8082/" "Mozilla/5.0 (X11; Linux x86_64; rv:38.0) Gecko/20100101 Firefox/38.0" 172.17.179.93 - - [29/Mar/2016:11:54:59 +0200] "POST /True HTTP/1.1" 404 - "http://172.17.179.93:8082/" "Mozilla/5.0 (X11; Linux x86_64; rv:38.0) Gecko/20100101 Firefox/38.0

The problem is due when we use "xsend module" as true If I perform the upload from firefox on the same server I'm able to upload. I use sqlite database. What can I do?

upload • 578 views
ADD COMMENTlink modified 23 months ago by Jennifer Hillman Jackson24k • written 23 months ago by jarod_v60
0
gravatar for Jennifer Hillman Jackson
23 months ago by
United States
Jennifer Hillman Jackson24k wrote:

Hello,

Consider upgrading your database:

https://wiki.galaxyproject.org/Admin/GetGalaxy https://wiki.galaxyproject.org/Admin/Config/Performance/ProductionServer#Switching_to_a_database_server

Thanks, Jen, Galaxy team

ADD COMMENTlink written 23 months ago by Jennifer Hillman Jackson24k
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