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• Bowtie/Bwa Not Running
  I tried to start an alignment with bowtie and bwa last night, and they are still "waiting to run"...
• Jobs take long time to start running
  Hi, I have set few jobs to run more than 24 hours ago (BWA and Tophat) but they are still flagge...
• Galaxy "This job is waiting to run" - but it never runs!!
  I've had a problem with galaxy all day, when I try to use the BWA-MEM tool I get the message "Thi...
• Bwa/Bowtie Not Running
  Hi- I'm having trouble getting bwa to run on the main server. It seems stuck in the "waiting to ...
• This job is waiting to run
  Dear Madam/Sir, I am using your Galaxy service and I have a problem. I need to do 3 steps for my...
• BWA doesn't work
  Hi, I'm trying to use BWA since yesterday but the jobs are still waiting to run. Could it be a s...
• Reason "The job is waiting to run" idle for 3 hours
  The job was created at this below time, kindly suggest what needs to be done in such a case. Cre...
• The job is waiting to run
  I have just uploaded my sequence and it grey and says "the job is waiting to run". Can I fix this?
• Bowtie2/BWA-MEM remain waiting to run for several days in Main server. Is it only in my account?
  Hi all, I've been trying to run Bowtie2 and BWA-MEM with several datasets and in different histo...
• Job is waiting to run.
  Hello,  I have been trying to run a Bowtie job(s) for two full days and they just hang with the ...
• JOB WAITING TO RUN
  I have been trying to run a Trinity job for two days and it hang with the "waiting to run" status...
• Assembly waiting to run
  I am trying to do a hybrid assembly using unicycler in Galaxy, but my job has had the status "wai...
• Need help with "Map with BWA for Illumina" tool
  Thanks a lot for your answer. I  used FASTQ groomer to convert fastq format to fastqsanger. I sta...
• bwa not recognizing fastq files
  I am trying to map a set of fastq sequences to a custom genome, using BWA. The two setrs of trip...
• Not able to run BWA
  I'm trying to run BWA-MEM using Galaxy. I have a reference.fastq (I built a custom reference) and...
• "Jobs Is Waiting To Run" All Day On Main
  Since earlier today (at least 6 hours), all of my jobs have been stuck in the "waiting to run" st...
• "Job Is Waiting To Run" Forever
  Dear Sir/Madam, I am a registered user of the public Galaxy Server (main). Any job I submitted t...
• Job Is Waiting To Run For Two Days..
  Hi, I am in the step "map with bowtie" with a status of JOB IS WAITING TO RUN for two days. I tri...
• map with bwa-mem error
  Could not determine BWA version Traceback (most recent call last): File "/Users/shed_tools/toolsh...
• Tophat is stuck in "jobs waiting to run"
  Just had a quick question: I'm trying to use tophat, but my jobs are stuck in waiting to run. The...
• Jobs Waiting to Run
  Hello, I submitted a job using Lastz several hours ago and it still says "Job is waiting to run....
• cufflink and tophat queueing more than 24hrs
  cufflink queue is not working. I have been trying to run tophat and cufflink since last 2 days, n...
• FASTAQ not able to be selected in BWA, though FastaQC passed
  I need some help. I am trying to map two fastq datasets with Bwa-mem. If I design a workflow by...
• Problem running BWA-MEM mapping
  I am trying to run BWA-MEM mapping in galaxy. I have uploaded FASTQ files using fastqcssanger and...
• Job Is Waiting To Run
  Dear Sir/Madam, I am a registered user of the public Galaxy Server (main). I was trying to uploa...