on our local galaxy-docker-stable instance I would like to include additional reference genomes for bowtie to shorten the time for the users.
I downloaded fasta files for mm10 and GRCh38 uploaded to my history and tried to run the bowtie index builder from the local data --> run data manger tools section.
I cannot select the history fasta file to build an index although we can map against the same fasta using bowtie when we provide it in the history.
What am I missing?
Do I have to process the fasta before in any way?
Thank you very much for your help.