Question: problems running an extracted workflow
gravatar for lisa.schechter
2.7 years ago by
lisa.schechter0 wrote:

I am having a problem running a workflow I constructed.  The workflow involves: 1) mapping DNA sequences to a reference genome (human hg19), 2) identifying variants using FreeBayes, and 3) annotating the locations of the polymorphisms using ANNOVAR.  The programs run fine in my history, but when I extract a workflow and then try to run the workflow, things get hung up on the ANNOVAR step.  An error message says "Required metadata values are missing". For some reason, the parameters from my history don't seem to transfer into the workflow.  Also, I cannot edit this step at all in the workflow editor.  How do I fix this?  


workflow software error • 706 views
ADD COMMENTlink written 2.7 years ago by lisa.schechter0
gravatar for Jennifer Hillman Jackson
2.6 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hi Lisa,

We would like to have a look at the history and workflow to investigate. Please generate a share link for both and email these to Including a link to this post would be helpful. Please be certain that all datasets in the analysis path remain undeleted.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.6 years ago by Jennifer Hillman Jackson25k
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