Question: API trouble with get_latest_installable_revisions
0
gravatar for cgpwytko
2.2 years ago by
cgpwytko0
United States
cgpwytko0 wrote:

I'm attempting to use the python api get_latest_installable_revisions in the galaxy folder

(galaxy/lib/galaxy/webapps/galaxy/api)

using curl in php with the following code

 

    public function get_latest_installable_revision ($admin_api_key, $tool_shed_url, $name_of_repo, $name_owner_of_repo){

        $i = curl_init();

        $api_key = $this->galaxy->getAPIKey();

        $url = $this->galaxy->getURL() . '/api/tool_shed_repositories/' . 'get_latest_installable_revision';
        
        $data = array(
                
                'tool_shed_url' => 'https://toolshed.g2.bx.psu.edu/repository?repository_id=253e22fdaf6a52c1'
                'name' => 'codonlogo',
                'owner' => 'davidmurphy', 
                'key' => $api_key
                
        );
        $data_string = '';
        foreach($data as $key=>$value) { 
            $data_string .= $key.'='.$value.'&'; 
        }
        //rtrim($data_string, '&');
        print($data_string);
        print "\n";
        
        curl_setopt($i, CURLOPT_URL, $url);
        curl_setopt($i,CURLOPT_POST, count($data));
        curl_setopt($i, CURLOPT_POSTFIELDS, $data_string);
        curl_setopt($i, CURLOPT_CUSTOMREQUEST, "POST");
        curl_setopt($i, CURLOPT_RETURNTRANSFER, true);
        
        $result = curl_exec($i);
          
        $info = curl_getinfo($i);
         
        $array = json_decode($result, true);
        
        print_r ($array);
         
        curl_close($i);
        }

 

and receive the following error:

tool_shed_url=https://toolshed.g2.bx.psu.edu/repository?repository_id=253e22fdaf6a52c1&name=codonlogo&owner=davidmurphy&key=6d79393594d00b17c63806144311d492&
Array
(
    [traceback] => Traceback (most recent call last):
  File "/home/cwytko/galaxy/lib/galaxy/web/framework/decorators.py", line 258, in decorator
    rval = func( self, trans, *args, **kwargs)
  File "/home/cwytko/galaxy/lib/galaxy/webapps/galaxy/api/tool_shed_repositories.py", line 115, in get_latest_installable_revision
    changeset_revisions = json.loads( raw_text )
  File "/usr/lib/python2.7/json/__init__.py", line 338, in loads
    return _default_decoder.decode(s)
  File "/usr/lib/python2.7/json/decoder.py", line 366, in decode
    obj, end = self.raw_decode(s, idx=_w(s, 0).end())
  File "/usr/lib/python2.7/json/decoder.py", line 384, in raw_decode
    raise ValueError("No JSON object could be decoded")
ValueError: No JSON object could be decoded

    [err_msg] => Uncaught exception in exposed API method:
    [err_code] => 0
)

 

Any insight on this problem would be much appreciated

 

 

software error galaxy • 607 views
ADD COMMENTlink modified 2.2 years ago by Jennifer Hillman Jackson23k • written 2.2 years ago by cgpwytko0
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