Question: gff read error
0
gravatar for ajmaninisha
3.1 years ago by
ajmaninisha • 30
Canada
ajmaninisha • 30 wrote:

Hi,

 

I am trying to use gff read and it is giving the error:

 

Uncaught exception in API exposed method

 

 

Kindly advise

 

Regards

Nisha

gff software error read • 1.0k views
ADD COMMENT • link • modified 3.1 years ago • written 3.1 years ago by ajmaninisha • 30

More details will help us to answer best:

Where are you using the tool? URL of server, if public, or cloud or local.

Which exact tool are you using? Common tool panel name if at http://usegalaxy.org, or tool name and URL to external public server, or a link to the Tool Send repo if using a local/cloud.

How was the tool executed? Through the user web interface (direct from the history or in a workflow?) or through your own API script? 

ADD REPLY • link written 3.1 years ago by Jennifer Hillman Jackson ♦ 25k

i am using it on usegalaxy .org . trying to use it from NGS: RNA SEQ

ADD REPLY • link written 3.1 years ago by ajmaninisha • 30
0
gravatar for Jennifer Hillman Jackson
3.1 years ago by
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

I can replicate the problem. Our team will be working to correct this with priority. Please follow this github ticket for progress: https://github.com/galaxyproject/galaxy/issues/999

Thank you for reporting the problem! Jen, Galaxy team

ADD COMMENT • link written 3.1 years ago by Jennifer Hillman Jackson ♦ 25k

ok thanks

ADD REPLY • link written 3.1 years ago by ajmaninisha • 30

Hi Jen,

I think gff read is not working kindly advise. I am using use.galaxy.org.

Kindly advise

Nisha

ADD REPLY • link written 3.1 years ago by ajmaninisha • 30

Please follow the github ticket for the resolution. We are actively working on correcting the problem with the tool.

ADD REPLY • link written 3.1 years ago by Jennifer Hillman Jackson ♦ 25k
0
gravatar for ajmaninisha
3.1 years ago by
ajmaninisha • 30
Canada
ajmaninisha • 30 wrote:

kindly advise i am still waiting for gffread to work

ADD COMMENT • link written 3.1 years ago by ajmaninisha • 30

Please follow the github ticket for the resolution. We are actively working on correcting the problem with the tool.

ADD REPLY • link written 3.1 years ago by Jennifer Hillman Jackson ♦ 25k

Hi, I'm having the same problem but the github link doesn't seem to provide a resolution. Is there an update for this? Thanks. 

ADD REPLY • link written 2.9 years ago by as9309 • 0

The ticket will track progress as the development team (both core and community) triage, troubleshoot, and publish the tool fix. I will also make an internal request to have it looked it. Thanks for your patience! Jen, Galaxy team

ADD REPLY • link written 2.9 years ago by Jennifer Hillman Jackson ♦ 25k
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