Question: Dataset subtraction for overlapping regions
0
gravatar for kristi.stephenson
3.1 years ago by
United States
kristi.stephenson • 0 wrote:

I am trying to subtract two datasets, where they do not have identical start and stop positions, but overlapping positions. This feature used to be available in Galaxy but I can no longer find it under Join, Subtract, and Group. Essentially what I want to be able to do is as follows. Are there any supporting tools on Galaxy to do this?

 

Data 1

chr1 10  50
chr1 50  100
chr1 100 150

Data 2

chr1 15  45
chr1 125 150

Subtracting Data 2 from Data 1 will yield:

chr1 10  14
chr1 46  50
chr1 50  100
chr1 100 124

galaxy • 618 views
ADD COMMENT • link • modified 3.1 years ago • written 3.1 years ago by kristi.stephenson • 0
1
gravatar for Jennifer Hillman Jackson
3.1 years ago by
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The tool you are probably looking for is called Operate on Genomic Intervals > Subtract.

Hope this helps, Jen, Galaxy team

ADD COMMENT • link written 3.1 years ago by Jennifer Hillman Jackson ♦ 25k
0
gravatar for kristi.stephenson
3.1 years ago by
United States
kristi.stephenson • 0 wrote:

Yes, thanks!

ADD COMMENT • link written 3.1 years ago by kristi.stephenson • 0
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