Question: Input Contain Special Characters
gravatar for Zhe Chen
8.2 years ago by
Zhe Chen20
Zhe Chen20 wrote:
Hi, I was implementing a galaxy tool. A problem occurs when my input contains ">", linebreak, galaxy seems traslate them to __gt__, __cr____cn__. Is there a way to stop this translation? Or suggestion to fix this problem? Thanks
galaxy • 549 views
ADD COMMENTlink modified 8.2 years ago by Jelle Scholtalbers360 • written 8.2 years ago by Zhe Chen20
gravatar for Jelle Scholtalbers
8.2 years ago by
Jelle Scholtalbers360 wrote:
Hi, take a look at <options sanitize="False"/> as used also in tools/fastq/fastq_manipulation.xml Cheers, Jelle
ADD COMMENTlink written 8.2 years ago by Jelle Scholtalbers360
It's worth noting that command line parameters are sanitized for security purposes, so passing them unsanitized should only be done in controlled environments where security is not a concern. Otherwise, parameters should be restored to their original values by the tool or a wrapper around the tool. --nate
ADD REPLYlink written 8.2 years ago by Nate Coraor3.2k
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