2.6 years ago by
Please see the tools under the group "NGS: VCF Manipulation". VCFCombine may be enough, but explore the other manipulation options to be certain that there is more these tools can do that will enable optimal downstream-stream data use.
Now, annotation can be included directly within Annovar, but these require specific pre-computed reference data. These won't be representative of the annotation already included in inputs based on content derived from upstream analysis.
Take care, Jen, Galaxy team