Question: Problem for converting SAM file to BAM file
0
gravatar for jamwest101
3.1 years ago by
jamwest10120
Canada
jamwest10120 wrote:

Hi, 

Recently,galaxy always reports error when I convert filtered SAM file to BAM file by using the software of NGS:SAMtools--->SAM to BAM (error message: [E::sam_parse1] missing SAM header [W::sam_read1] parse error at line 1 [bam_sort_core] truncated file. Continue anyway.). And then, I noticed that the software version is updated from 1.1.3 to 2.0.

Previously, the tool was working very well in the version 1.1.3. I tried to switch the software version to 1.1.3, but Galaxy will automatically switch back to 2.0 after I click Execute. 

How can I fix it?

Alex

software error • 1.2k views
ADD COMMENTlink written 3.1 years ago by jamwest10120
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 95 users visited in the last hour