Question: having problem with GATK
0
gravatar for rutuja.8788
3.2 years ago by
India
rutuja.87880 wrote:

I am Bhagyashri and i have problem using GATK tool in GALAXY. I am getting this error mentioned bellow. I have tried every possible way known to me but i am not able to solve it.

"Picked up _JAVA_OPTIONS: -Djava.io.tmpdir=/galaxy-repl/main/scratch [Fri Jun 12 01:54:32 CDT 2015] net.sf.picard.sam.CreateSequenceDictionary REFERENCE=/galaxy-repl/main/scratch/tmp-gatk-0_0gVM/gatk_input.fasta OUTPUT=/galaxy-repl/main/scratch/tmp-gatk-0"

galaxy • 803 views
ADD COMMENTlink written 3.2 years ago by rutuja.87880
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