Joining multiple datasets from same experiment.

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Question: Joining multiple datasets from same experiment.

3.6 years ago by

smn5360 • 10

Brunei Darussalam

smn5360 • 10 wrote:

Want to join datasets from replicates

Sample1

MYC 5.4

ERBB2 8.7

ERGF 1.1

A little challenge will be to combine all these files into a single table kinda looking like this:

Sample1 Sample2 ...

MYC 5.4 7.9

ERBB2 8.7 8.1

ERGF 1.1 0.7

...

How do I arrange 70 sample data in the above manner using galaxy.

alignment • 917 views

ADD COMMENT • link •

modified 3.6 years ago by Martin Čech ♦♦ 4.9k • written 3.6 years ago by smn5360 • 10

ADD REPLY • link modified 3.6 years ago • written 3.6 years ago by Guy Reeves • 1.0k

3.6 years ago by

Guy Reeves • 1.0k

Germany

Guy Reeves • 1.0k wrote:

Somebody might have a better way but you could use the 'Paste two files side by side' tool. However, this tool only works with 2 files (there may be versions of this tool that might work with more, which might be worth looking for on the toolshed). But you could set a workflow up with pastes file 1 and 2 to make 'file 1,2' . Then paste file 3 to 'file 1,2' and so on.... . This will end up with lots of duplicate copies of MYC, ERBB2, ERGF columns, which could all then be cut in a single final step using the Cut columns from a table. Obviously setting up a work flow with 70 steps will be a pain and there might be a more elegant way to do this.

Thanks Guy

ADD COMMENT • link written 3.6 years ago by Guy Reeves • 1.0k

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