Question: question about using bam to bigwig
0
gravatar for xwang2
3.6 years ago by
xwang20
United States
xwang20 wrote:

Hello!

Traceback (most recent call last):
  File "/shed_tools/toolshed.g2.bx.psu.edu/repos/brad-chapman/bam_to_bigwig/52bcd04ee0d6/bam_to_bigwig/bam_to_bigwig/bam_to_bigwig.py", line 24, in <module>
    import pysam
ImportError: No module named pysam

 

 

could you help me to figure out how to setup up pysam in this tool?

Thanks!

eggs local python • 798 views
ADD COMMENTlink modified 3.6 years ago by Jennifer Hillman Jackson25k • written 3.6 years ago by xwang20
0
gravatar for Jennifer Hillman Jackson
3.6 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Make sure you are using or have updated to the latest release of Galaxy, are using a version of python compatible with Galaxy, and that it is in the Galaxy user's $PATH:
http://wiki.galaxyproject.org/Admin/Python

Thanks, Jen, Galaxy team

ADD COMMENTlink written 3.6 years ago by Jennifer Hillman Jackson25k
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