Hello Galaxy,
My boost installation is falling on two targets. These are the following targets it has failed at:
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/basic_archive.o
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/basic_iarchive.o
libs/serialization/src/basic_iarchive.cpp: In member function ‘const boost::archive::detail::basic_pointer_iserializer* boo*&, const boost::archive::detailibs/serialization/src/basic_iarchive.cpp:437:23: warning: variable ‘new_cid’ set but not used [-Wunused-but-set-variable]
^
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/basic_iserializer.o
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/basic_oserializer.o
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/basic_pointer_iserializer.o
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/basic_pointer_oserializer.o
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/basic_serializer_map.o
libs/serialization/src/basic_serializer_map.cpp: In member function ‘bool boost::archive::detail::basic_serializer_map::insert(const boost::archive::detail::basic_serializer*)’:
libs/serialization/src/basic_serializer_map.cpp:46:47: warning: variable ‘result’ set but not used [-Wunused-but-set-variable]
const std::pair<map_type::iterator, bool> result =
^
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/basic_text_iprimitive.o
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/basic_xml_archive.o
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/binary_iarchive.o
The library i need from boost has been successfully created, but the tool overall fails, and the env.sh file is not created.
Any help is greatly appreciated.
Marco
Can you point me to the exact Tool Shed dependency, please?
The tool dependency file can be found here:
https://github.com/morinlab/galaxy_tools/blob/master/delly/tool_dependencies.xml
I hope this is what you are looking for.
Marco, this was fixed, isn't? Can you write the solution and close this question? Thanks.