Question: package_boost_1_53 installation issues
0
gravatar for marcoalbuquerque.sfu
3.9 years ago by
Canada
marcoalbuquerque.sfu50 wrote:

Hello Galaxy,

My boost installation is falling on two targets. These are the following targets it has failed at:


gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/basic_archive.o
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/basic_iarchive.o
libs/serialization/src/basic_iarchive.cpp: In member function ‘const boost::archive::detail::basic_pointer_iserializer* boo*&, const boost::archive::detailibs/serialization/src/basic_iarchive.cpp:437:23: warning: variable ‘new_cid’ set but not used [-Wunused-but-set-variable]
                       ^
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/basic_iserializer.o
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/basic_oserializer.o
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/basic_pointer_iserializer.o
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/basic_pointer_oserializer.o
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/basic_serializer_map.o
libs/serialization/src/basic_serializer_map.cpp: In member function ‘bool boost::archive::detail::basic_serializer_map::insert(const boost::archive::detail::basic_serializer*)’:
libs/serialization/src/basic_serializer_map.cpp:46:47: warning: variable ‘result’ set but not used [-Wunused-but-set-variable]
     const std::pair<map_type::iterator, bool> result =
                                               ^
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/basic_text_iprimitive.o
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/basic_xml_archive.o
gcc.compile.c++ bin.v2/libs/serialization/build/gcc-4.8/release/address-model-64/link-static/threading-multi/binary_iarchive.o


The library i need from boost has been successfully created, but the tool overall fails, and the env.sh file is not created.

Any help is greatly appreciated.

Marco

 

 

galaxy boost • 820 views
ADD COMMENTlink modified 3.8 years ago • written 3.9 years ago by marcoalbuquerque.sfu50
1

Can you point me to the exact Tool Shed dependency, please?

ADD REPLYlink written 3.9 years ago by Bjoern Gruening5.1k

The tool dependency file can be found here:

https://github.com/morinlab/galaxy_tools/blob/master/delly/tool_dependencies.xml

I hope this is what you are looking for.

ADD REPLYlink written 3.8 years ago by marcoalbuquerque.sfu50
1

Marco, this was fixed, isn't? Can you write the solution and close this question? Thanks.

ADD REPLYlink written 3.8 years ago by Bjoern Gruening5.1k
1
gravatar for marcoalbuquerque.sfu
3.8 years ago by
Canada
marcoalbuquerque.sfu50 wrote:

Solution:

package_boost_1_55 works great (was available in the test toolshed, now available in the public toolshed)

Thanks Bjoern

 

ADD COMMENTlink written 3.8 years ago by marcoalbuquerque.sfu50
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