Question: Where to find Bowtie2 output stderr filehandle?
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hudiejie • 20 wrote:
Dear all,
I want to find the alignment rate as suggested in bowtie2 "standard error" ("stderr") file, but after running bowtie2, there is only one bam file of aligned reads. where can I find the info like this:
20000 reads; of these: 20000 (100.00%) were unpaired; of these: 1247 (6.24%) aligned 0 times 18739 (93.69%) aligned exactly 1 time 14 (0.07%) aligned >1 times 93.77% overall alignment rate
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modified 4.1 years ago
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Bjoern Gruening ♦ 5.1k
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written
4.1 years ago by
hudiejie • 20
