Question: Sort FASTQ files
0
gravatar for devillartay
4.4 years ago by
devillartay30
France
devillartay30 wrote:

Is there a way in Galaxy  to sort sequences in a FASTQ file?

thanks

galaxy • 1.1k views
ADD COMMENTlink modified 4.4 years ago • written 4.4 years ago by devillartay30

Wonderfull, the "FASTQ to tabular" method did exactly what I was lookin for.

Thanks a lot Bjoern for your help

Cheers,

jp

ADD REPLYlink written 4.4 years ago by devillartay30
1
gravatar for Bjoern Gruening
4.4 years ago by
Bjoern Gruening5.1k
Germany
Bjoern Gruening5.1k wrote:

Hi,

if you can install that tool from the Tool Shed, you should be fine:

http://toolshed.g2.bx.psu.edu/view/iuc/samtools_sort

Otherwise, you can use "FASTQ to tabular", sort this file with the "sort" Tool and convert it back into FASTQ with "Tabular to FASTQ".

Cheers,

Bjoern

ADD COMMENTlink written 4.4 years ago by Bjoern Gruening5.1k
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