Question: Cannot select data sets in local galaxy sever
0
gravatar for satshil.r
3.7 years ago by
satshil.r0
United States
satshil.r0 wrote:

Hey,

So I've installed a local galaxy server in order to helpout processing some large data we have. I imported the data using This guide and the data imported correctly. I can see the information when I view the data in my history.

However, I can't seem to select the data using any tools. I've installed a trimmomatic wrapper and I cannot select the forward/reverse reads. The dropdown menu is empty.

I've edited the file's permissions to allow my users access to the files. I uploaded a test file using the normal http uploader and those files as well I cannot access. I've tired fastq, fasta, and bam/sam files.

Is there a setting somewhere I need to edit in order to allow for processing of these files?

fastq galaxy trimmomatic • 1.1k views
ADD COMMENTlink modified 3.7 years ago by Bjoern Gruening4.8k • written 3.7 years ago by satshil.r0
0
gravatar for Bjoern Gruening
3.7 years ago by
Bjoern Gruening4.8k
Germany
Bjoern Gruening4.8k wrote:

Hi,

uploaded fastq files will be recognised as 'fastq' format. trimmomatic and related tools only takes inputs in 'fastqsanger' format. You can easily change the filetype of your dataset.

Read more about managing datsets in Galaxy here:

https://wiki.galaxyproject.org/Learn/ManagingDatasets?action=show&redirect=Learn%2FManaging+Datasets

And about the fastq format here:

http://en.wikipedia.org/wiki/FASTQ_format

Ciao,

Bjoern

ADD COMMENTlink written 3.7 years ago by Bjoern Gruening4.8k
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