Question: Unable To Find The File
gravatar for do kadya
4.7 years ago by
do kadya130
do kadya130 wrote:
Respected Sir / Ma'am, 'x' tool having 3 commands, 1) command takes files from path. ex perl --mode 1 file1.bam file2.bam file3.fasta --output result1.txt 2) file4 must have name of result1.txt, file1.bam, file2.bam perl --mode 2 file4.txt --output-directory ~/result2/ for this second command how can i tell galaxy that i need to see the output file name and other 2 bam file name inside single text file. whenever I try to run this command it says file not found. I am uploading bam files by linking galaxy to that file hence when I specify full path, file1.bam and file2.bam are found. But I need result of 1st command. I want its file name in file4.txt How can I do this in galaxy ? Waiting for positive reply. Thank You. -- Chetan
galaxy • 693 views
ADD COMMENTlink modified 4.7 years ago by Bjoern Gruening5.1k • written 4.7 years ago by do kadya130
gravatar for Bjoern Gruening
4.7 years ago by
Bjoern Gruening5.1k
Bjoern Gruening5.1k wrote:
Hi Chetan, try to use the <configfile> feature to create file4.txt ... files.3E_tag_set Cheers, Bjoern Am 04.03.2014 15:04, schrieb do kadya:
ADD COMMENTlink written 4.7 years ago by Bjoern Gruening5.1k
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