Question: Question About Samtools In Galaxy
gravatar for Robert Jackman
5.2 years ago by
Robert Jackman10 wrote:
Hi, Can anyone tell me if the ability to randomly sample a sam or bam file (view -s) is available via Galaxy samtools? I can't find it but it might be an option that I am missing. sincerely, Robert Jackman
samtools bam • 1.3k views
ADD COMMENTlink modified 5.2 years ago by Jennifer Hillman Jackson25k • written 5.2 years ago by Robert Jackman10
gravatar for Jennifer Hillman Jackson
5.2 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hi Robert, This function is not wrapped into a tool yet by the dev team. I checked the Tool Shed as well and didn't see it there. But there is another option to get to the same result. The tool "Text Manipulation -> Select random lines from a file" can be used with a SAM file. Don't not use the tool on a BAM file. Hopefully this helps! Jen Galaxy team -- Jennifer Hillman-Jackson
ADD COMMENTlink written 5.2 years ago by Jennifer Hillman Jackson25k
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