Error Even Starting Up Galaxy

Question: Error Even Starting Up Galaxy

9.3 years ago by

Hi gang, I've setup galaxy to run before. But this time around, the server will not start. The setup is fairly straightforward though I'm using python 2.6. Below is the error message stack. I've made some modifications to the configuration, but just pathing and db stuff. I've even run a python shell to import the new module which works fine. Any suggestions will be really helpful, thanks! Paul Traceback (most recent call last): File "./scripts/paster.py", line 16, in <module> from galaxy import eggs File "/home/prigor/projects/galaxy/genomics/galaxy_dist/lib/galaxy/__init__ .py", line 5, in <module> __import__( "pkg_resources" ).declare_namespace( __name__ ) File "/home/prigor/projects/galaxy/genomics/galaxy_dist/lib/pkg_resources.p y", line 16, in <module> import sys, os, zipimport, time, re, imp, new ImportError: No module named new (2.6.2)04:42 PM 16807 prigor@localhost~/projects/galaxy/genomics/galaxy_dist $ python /home/prigor/projects/galaxy/genomics/galaxy_dist/lib/pkg_resources.py -- Paul Rigor http://www.paulrigor.net/ http://www.ics.uci.edu/~prigor

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modified 9.3 years ago by James Taylor • 320 • written 9.3 years ago by Paul Rigor (prigor@uci) • 50

9.3 years ago by

James Taylor • 320

United States

James Taylor • 320 wrote:

Paul, It looks like a failure importing the module 'new' which is a standard module (though deprecated in 2.6 and removed in 3.0). Does importing this module directly from a python shell work? For example: james@localhost% python2.6 -ES Python 2.6 (trunk:66714:66715M, Oct 1 2008, 18:36:04) [GCC 4.0.1 (Apple Computer, Inc. build 5370)] on darwin '/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/ new.pyc'

ADD COMMENT • link written 9.3 years ago by James Taylor • 320

You know, I'm blind... I completely missed the -S option. Haven't really used that switch before. Though, the 'new' module is deprecated, it actually still exists. See my sessions below: $ python -S Python 2.6.2 (r262:71600, May 19 2009, 10:23:42) [GCC 4.1.2 20080704 (Red Hat 4.1.2-44)] on linux2 Traceback (most recent call last): File "<stdin>", line 1, in <module> ImportError: No module named new (2.6.2)06:19 PM 16930 prigor@localhost~/projects/xx/svn/genomics/trunk/code/python $ python Python 2.6.2 (r262:71600, May 19 2009, 10:23:42) [GCC 4.1.2 20080704 (Red Hat 4.1.2-44)] on linux2 Type "help", "copyright", "credits" or "license" for more information. '/pkg/python/2.6.2/lib/python2.6/new.pyc' -- Paul Rigor http://www.paulrigor.net/ http://www.ics.uci.edu/~prigor

ADD REPLY • link written 9.3 years ago by Paul Rigor (prigor@uci) • 50

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