Re: Galaxy Server Running Error In Fetching Sequences

Question: Re: Galaxy Server Running Error In Fetching Sequences

6.7 years ago by

Penn State

Hong: I'm forwarding this to our official user mailing list. Please, use it in the future for your inquiries. Thanks! anton Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org

galaxy • 541 views

ADD COMMENT • link •

modified 6.7 years ago by Jennifer Hillman Jackson ♦ 25k • written 6.7 years ago by Anton Nekrutenko ♦ 1.7k

6.7 years ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hello Hong, There is likely a problem with the formatting of your input file. BED and GFF format are very different, and this may be the problem. You will want to input a strict "BED6" file to this tool: http://wiki.g2.bx.psu.edu/Learn/Datatypes#Bed http://wiki.g2.bx.psu.edu/Learn/Datatypes#GFF If you continue to have problems, please submit a bug report by clicking on the green bug icon for the red error dataset. This allows us to access your data/job privately and provide help/feedback. Best, Jen Galaxy team

ADD COMMENT • link written 6.7 years ago by Jennifer Hillman Jackson ♦ 25k

6.7 years ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hello Hong, To let you know, the Extract tool will work with any fasta dataset in your history as a "Custom reference genome". Instructions are here: http://wiki.g2.bx.psu.edu/Support#Custom_reference_genome Take care, Jen Galaxy team

ADD COMMENT • link written 6.7 years ago by Jennifer Hillman Jackson ♦ 25k

Please log in to add an answer.

Similar posts • Search »