Question: Re: Filtering Reads On Wrong Strand Before Fpkm Scoring On Cufflinks
gravatar for Bomba Dam
6.8 years ago by
Bomba Dam40
Bomba Dam40 wrote:
Dear Noa, Bowtie in --best<http:"" manual.shtml="" #bowtie-options-best="">mode eliminates strand bias by forcing Bowtie to select one strand or the other with a probability that is proportional to the number of best sites on the strand. try with this mode. I am also trying to do the same. If you find any good alternative for the whole process please let me know. Bomba -- Dr. BOMBA DAM Alexander von Humboldt Postdoctoral Research Fellow Max-Planck-Institut für terrestrische Mikrobiologie Karl-von-Frisch-Straße 10 D-35043 Marburg, Germany E mail: PHONE: +49 176 321 321 75 (Mobile); +49 6421 178 721 (LAB); +49 6421 2828516 (ROOM) Assistant Professor of Microbiology Department of Botany, Institute of Science Visva-Bharati (A Central University) Santiniketan, West Bengal 731235, India. E mail:,;
alignment bowtie • 525 views
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