Question: About Primer/Adaptor Removal?
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gravatar for Arthur Zheng
6.2 years ago by
Arthur Zheng50
Arthur Zheng50 wrote:
Hi, Does galaxy provide primer/adaptor removal for NGS (illumina) reads? Thanks. Arthur
galaxy • 930 views
ADD COMMENTlink modified 6.2 years ago by Jennifer Hillman Jackson24k • written 6.2 years ago by Arthur Zheng50
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gravatar for Jennifer Hillman Jackson
6.2 years ago by
United States
Jennifer Hillman Jackson24k wrote:
Hello Arthur, The tool "NGS: QC and manipulation -> FASTX-Toolkit -> Clip" will remove specified 3' adapter sequence. Other "Trim" tools in the sections "NGS: QC and manipulation -> Generic FASTQ manipulation & FASTX-Toolkit" may be of interest, if you want to clip by length/quality. Hopefully this provides you with some options, Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support
ADD COMMENTlink written 6.2 years ago by Jennifer Hillman Jackson24k
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