Cloudman - Persist Changes To File System Is Not A Hyperlink / Clickable

Question: Cloudman - Persist Changes To File System Is Not A Hyperlink / Clickable

6.9 years ago by

mailing list • 840 wrote:

I'm following the instructions here: http://wiki.g2.bx.psu.edu/Admin/Cloud/Customize%20Galaxy%20Cloud I ssh'd in and just made this change: cd /mnt/galaxyData sudo git clone git://github.com/JaneliaSciComp/msg.git Now I want to persist it, but as my subject line says, I don't seem to have the option in the admin. Thanks, Greg

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modified 6.9 years ago by Dannon Baker ♦ 3.7k • written 6.9 years ago by mailing list • 840

6.9 years ago by

Dannon Baker ♦ 3.7k

United States

Dannon Baker ♦ 3.7k wrote:

Sorry, I should have specified before -- /mnt/galaxyData is automatically persisted, as it is assumed (and used behind the scenes in the case of a Galaxy Cluster) that this is where data will be kept. It's only /mnt/galaxyTools or /mnt/galaxyIndices that need individual flagging for persistence. So, /mnt/galaxyData *is* safe to use for your own customizations and will be persisted automatically with no additional steps required on your part. -Dannon

ADD COMMENT • link written 6.9 years ago by Dannon Baker ♦ 3.7k

So how do I get a share string for /mnt/galaxyData? Thanks again, Greg

ADD REPLY • link written 6.9 years ago by mailing list • 840

For sharing a cluster (of any kind) just click the sharing icon () next to the cluster name and the dialog that pops up will walk you through the next steps. -Dannon

ADD REPLY • link written 6.9 years ago by Dannon Baker ♦ 3.7k

Dear galaxy Users I am very very new to galaxy, will be highly obliged if some one could help me to find the way to analyse bacterial tramnscriptome. in the first step itself , i am having trouble to upload files... Does any one knows how to generate URL to upload data, my fastq files are about 3 gb each, Is there any specific pipeline to analyse bacterial transcriptome Thanking all of you Ateeq Ateequr Rehman House No. 2 ground floor Blauenstr. 10 79115 Freiburg im Breisgau ________________________________ To: mailing list <margeemail@gmail.com> Cc: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] CloudMan - Persist changes to file system is not a hyperlink / clickable For sharing a cluster (of any kind) just click the sharing icon () next to the cluster name and the dialog that pops up will walk you through the next steps. -Dannon So how do I get a share string for /mnt/galaxyData? ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/

ADD REPLY • link written 6.9 years ago by Ateequr Rehman • 150

Hey guys, I clicked the the sharing icon and chose public. I left my screen and came back five minutes later and the share dialog was gone. I guess it finished? I don't have a share string. Where would I get that? Thanks again for all the help. I'll get the hang of this soon. -Greg

ADD REPLY • link written 6.9 years ago by mailing list • 840

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