Question: Kraken bacterial classification mismatch
gravatar for pvishwa2
14 days ago by
pvishwa20 wrote:

I ran kraken on the same file twice- once on the galaxy server using the "bacteria" database, and once using my local installation using the "standard" database.

The galaxy results were as follows: galaxy.png

The local kraken results were as follows: local_kraken.png

What do I need to do to get my local kraken results in line with the one on Galaxy? To clarify, how do I alter my kraken call (on my system) to give me the results I see on Galaxy?

ADD COMMENTlink modified 14 days ago by Jennifer Hillman Jackson25k • written 14 days ago by pvishwa20
gravatar for Jennifer Hillman Jackson
14 days ago by
United States
Jennifer Hillman Jackson25k wrote:


The Kraken databases that Galaxy includes are available from the source. If you create/install Bacterial in your local, the results will be similar to those at Galaxy Main

Kraken Data Manager:

More about the databases:

Thanks! Jen, Galaxy team

ADD COMMENTlink written 14 days ago by Jennifer Hillman Jackson25k
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