I ran kraken on the same file twice- once on the galaxy server using the "bacteria" database, and once using my local installation using the "standard" database.
The galaxy results were as follows: https://postimg.cc/YhRMVWx5
The local kraken results were as follows: https://postimg.cc/gXzf3MCr
What do I need to do to get my local kraken results in line with the one on Galaxy? To clarify, how do I alter my kraken call (on my system) to give me the results I see on Galaxy?