I am a novice to Galaxy and I was working through the RNA-seq tutorial.
At one stage the tutorial asks you to use TopHat but when I went to the RNAseq tools I found out that it says TopHat is now being deprecated. Should we be using RNAstar instead now? Is there a tutorial for RNAstar please? Or do you suggest I continue using TopHat gapped until I am more confident about what I am doing?